PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004495983.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C3H
Protein Properties Length: 466aa    MW: 49644.7 Da    PI: 9.1561
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004495983.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.22e-115478327
                    S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                     ++C +++rtG+C yG+rC+F+H++
  XP_004495983.1 54 VPNCVYYMRTGFCGYGGRCRFNHPR 78
                    689********************96 PP

2zf-CCCH41.91.7e-1398123227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+++++tGtCk+G++CkF+H++
  XP_004495983.1  98 GEPPCQYYLKTGTCKFGASCKFHHPK 123
                     579*********************96 PP

3zf-CCCH37.73.4e-12144169227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+++++tG+Ck+G +CkF+H++
  XP_004495983.1 144 GEKECSYYLKTGQCKFGVTCKFHHPQ 169
                     7899********************97 PP

4zf-CCCH35.91.3e-11300326127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++ C++++rtG Ck+G  C+++H++
  XP_004495983.1 300 PGEPDCQYYLRTGDCKFGLACRYHHPQ 326
                     5789*********************97 PP

5zf-CCCH36.95.9e-12345369226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +  +C+f++++G+Ck+G++CkF H+
  XP_004495983.1 345 GVQPCSFYLQNGHCKFGSSCKFDHP 369
                     6789********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.3E-45178IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.2395179IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-65480IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-85478IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-55778IPR000571Zinc finger, CCCH-type
SMARTSM003565.8E-796123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.05196124IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-1198123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-699124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-5101122IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5142169IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.84142170IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-6144170IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9144169IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-4148168IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5299326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.727299327IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-9301326IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5304329IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.676343371IPR000571Zinc finger, CCCH-type
SMARTSM003568.7E-7343370IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6345374IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-9345369IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-6347369IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MDLYGRSPTR NGSNPVNQHE WRSPDAVLGE SMWHLTLGGG GGGGGESYPE RHGVPNCVYY  60
MRTGFCGYGG RCRFNHPRDR AAVAAAVRAT GDYPERLGEP PCQYYLKTGT CKFGASCKFH  120
HPKNGGGYLS QAPLNIYGYP LRPGEKECSY YLKTGQCKFG VTCKFHHPQP AGTSMPASAP  180
QFYQQVQSPT VPLPDQYGGA STSLRVARPP VLPGSYVQGA YGPVLLSPGV VPFPGWSPYS  240
APVSPVLSPG AQPAVGATSL YGVTQLSSST SAFARPYTPL PSSPGPSRSN LQEKVFPERP  300
GEPDCQYYLR TGDCKFGLAC RYHHPQDQVA ARPLLSPIGL PLRPGVQPCS FYLQNGHCKF  360
GSSCKFDHPV GSMRYSPSAS SLIDIPVAPY PVGSLLSNPV PTSSELGSKR ESFSTRMHSS  420
GNGSGTSGGL IFSQGGSVSL SDVQLSRQSS ASTNGSRSSR QSGEIR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0937450.0BT093745.1 Soybean clone JCVI-FLGm-17P23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004495983.10.0PREDICTED: zinc finger CCCH domain-containing protein 32 isoform X1
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLI1JFH10.0I1JFH1_SOYBN; Uncharacterized protein
STRINGGLYMA02G17260.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein